Transcript: lnc-COL4A1-6:1

Basic information

LNCipedia transcript ID: lnc-COL4A1-6:1 
LNCipedia gene ID: lnc-COL4A1-6
Location (hg19): chr13:110407168-110407615
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 448 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT035117
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -359.7904 non-coding 
CPAT coding probability 29.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL4A1-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL4A1-6:1
4.0 lnc-COL4A1-6:1
4.1 lnc-COL4A1-6:1
5.0 lnc-COL4A1-6:1
5.1 lnc-COL4A1-6:1
5.2 lnc-COL4A1-6:1