Transcript: lnc-COL4A2-10:1

Basic information

LNCipedia transcript ID: lnc-COL4A2-10:1 
LNCipedia gene ID: lnc-COL4A2-10
Location (hg19): chr13:110651472-110654283
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2682 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000016238.1|ENCT00000116169.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -57.7236 non-coding 
CPAT coding probability 7.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL4A2-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-COL4A2-10:1
5.0 lnc-COL4A2-10:1
5.1 lnc-COL4A2-10:1
5.2 lnc-COL4A2-10:1