Transcript: lnc-COL4A3BP-1:3

Basic information

LNCipedia transcript ID: lnc-COL4A3BP-1:3 
LNCipedia gene ID: lnc-COL4A3BP-1
Location (hg19): chr5:74615980-74632721
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 509 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000247372.2|ENST00000501886.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -11.1928 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL4A3BP-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-COL4A3BP-1:3
5.0 lnc-COL4A3BP-1:3
5.1 lnc-ANKRD34B-106:2
5.2 lnc-COL4A3BP-1:3