Transcript: lnc-COL6A3-13:2

Basic information

LNCipedia transcript ID: lnc-COL6A3-13:2 
LNCipedia gene ID: lnc-COL6A3-13
Location (hg19): chr2:238394497-238395791
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1295 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000052051.1|FTMT20600015294.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -74.8605 non-coding 
CPAT coding probability 13.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL6A3-13:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AC112721.1.1-7:2
5.0 lnc-AC112721.1.1-7:2
5.1 lnc-ASB18-20:2
5.2 lnc-COL6A3-13:2