Transcript: lnc-COL6A3-3:1

Basic information

LNCipedia transcript ID: lnc-COL6A3-3:1 
LNCipedia gene ID: lnc-COL6A3-3
Location (hg19): chr2:238037370-238039886
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 459 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004618; NONHSAT077625
Alternative gene names: XLOC_002527; linc-IQCA1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 10.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL6A3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL6A3-3:1
3.1 lnc-COL6A3-3:1
4.0 lnc-COL6A3-3:1
4.1 lnc-COL6A3-3:1
5.0 lnc-COL6A3-3:1
5.1 lnc-ASB18-6:1
5.2 lnc-COL6A3-3:1