Transcript: lnc-COL6A3-5:15

Basic information

LNCipedia transcript ID: lnc-COL6A3-5:15 
LNCipedia gene ID: lnc-COL6A3-5
Location (hg19): chr2:238483333-238484527
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 937 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT077651
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 258.2326 coding 
CPAT coding probability 3.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-COL6A3-5:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC112721.1.1-5:4
4.0 lnc-AC112721.1.1-5:4
4.1 lnc-AC112721.1.1-5:4
5.0 lnc-AC112721.1.1-5:4
5.1 lnc-ASB18-22:1
5.2 lnc-COL6A3-5:15