Transcript: lnc-COL6A5-6:3

Basic information

LNCipedia transcript ID: lnc-COL6A5-6:3 
LNCipedia gene ID: lnc-COL6A5-6
Location (hg19): chr3:129964291-129967295
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 455 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT092110
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -282.8602 non-coding 
CPAT coding probability 13.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL6A5-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL6A5-4:4
4.0 lnc-COL6A5-6:3
4.1 lnc-COL6A5-6:3
5.0 lnc-COL6A5-6:3
5.1 lnc-ATP2C1-15:3
5.2 lnc-COL6A5-6:3