Transcript: lnc-COL6A6-2:1

Basic information

LNCipedia transcript ID: lnc-COL6A6-2:1 
LNCipedia gene ID: lnc-COL6A6-2
Location (hg19): chr3:130385567-130401304
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1331 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_2469_chr3:130385566-130397833_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.9253 non-coding 
CPAT coding probability 2.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL6A6-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL6A6-2:1
4.0 lnc-COL6A6-2:1
4.1 lnc-COL6A6-2:1
5.0 lnc-COL6A6-2:1
5.1 lnc-ATP2C1-5:1
5.2 lnc-COL6A6-2:1