Transcript: lnc-COL9A1-1:1

Basic information

LNCipedia transcript ID: lnc-COL9A1-1:1 
LNCipedia gene ID: lnc-COL9A1-1
Ensembl Gene ID: ENSG00000224349
Ensembl Transcript ID: ENST00000448363
Location (hg19): chr6:71122531-71123653
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 349 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000448363.2; RP11-462G2.2-001; OTTHUMT00000041136.2; NONHSAT113445
Alternative gene names: ENSG00000224349.2; RP11-462G2.2; OTTHUMG00000014990.2; AL365226.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -199.8294 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL9A1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL9A1-1:1
4.0 lnc-COL9A1-1:1
4.1 lnc-COL9A1-1:1
5.0 lnc-COL9A1-1:1
5.1 lnc-CEP162-82:1
5.2 lnc-COL9A1-1:1