Transcript: lnc-COL9A2-3:5

Basic information

LNCipedia transcript ID: lnc-COL9A2-3:5 
LNCipedia gene ID: lnc-COL9A2-3
Location (hg19): chr1:40780912-40781707
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 492 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT002634
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -246.3623 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL9A2-3:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPT1-3:4
4.0 lnc-COL9A2-3:5
4.1 lnc-COL9A2-3:5
5.0 lnc-COL9A2-3:5
5.1 lnc-BMP8B-11:4
5.2 lnc-COL9A2-3:5