Transcript: lnc-COLEC10-1:13

Basic information

LNCipedia transcript ID: lnc-COLEC10-1:13 
LNCipedia gene ID: lnc-COLEC10-1
Ensembl Gene ID: ENSG00000225885
Ensembl Transcript ID: ENST00000366457
Location (hg19): chr8:119294481-119297202
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 781 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000366457.2
Alternative gene names: ENSG00000225885.6; AC023590.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 18.8429 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COLEC10-1:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC023590.1.1-1:4
4.1 lnc-AC023590.1.1-1:4
5.0 lnc-AC023590.1.1-1:4
5.1 lnc-COLEC10-1:8
5.2 lnc-COLEC10-1:13