Transcript: lnc-COLEC10-1:14

Basic information

LNCipedia transcript ID: lnc-COLEC10-1:14 
LNCipedia gene ID: lnc-COLEC10-1
Ensembl Gene ID: ENSG00000225885
Ensembl Transcript ID: ENST00000449065
Location (hg19): chr8:119294500-119300595
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 411 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000449065.5
Alternative gene names: ENSG00000225885.6; AC023590.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -288.8781 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COLEC10-1:14 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC023590.1.1-1:5
4.1 lnc-AC023590.1.1-1:5
5.0 lnc-AC023590.1.1-1:5
5.1 lnc-COLEC10-1:9
5.2 lnc-COLEC10-1:14