Transcript: lnc-COMMD10-13:1

Basic information

LNCipedia transcript ID: lnc-COMMD10-13:1 
LNCipedia gene ID: lnc-COMMD10-13
Ensembl Gene ID: ENSG00000250949
Ensembl Transcript ID: ENST00000511418
Location (hg19): chr5:116366896-116374265
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 420 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009489; ENST00000511418; ENST00000511418.1; RP11-492L8.2-001; OTTHUMT00000370934.1; NONHSAT103383
Alternative gene names: XLOC_004521; linc-DMXL1-7; ENSG00000250949; RP11-492L8.2; ENSG00000250949.1; OTTHUMG00000162881.1; AC093534.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.3357 non-coding 
CPAT coding probability 3.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COMMD10-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COMMD10-3:1
3.1 lnc-COMMD10-4:1
4.0 lnc-COMMD10-13:1
4.1 lnc-COMMD10-13:1
5.0 lnc-COMMD10-13:1
5.1 lnc-AP3S1-28:1
5.2 lnc-COMMD10-13:1