Transcript: lnc-COX14-1:1

Basic information

LNCipedia transcript ID: lnc-COX14-1:1 
LNCipedia gene ID: lnc-COX14-1
Location (hg19): chr12:50552484-50556731
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 547 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000547245.1; RP11-411N4.1-001; OTTHUMT00000406995.1; NONHSAT028180
Alternative gene names: ENSG00000257291.1; RP11-411N4.1; OTTHUMG00000170043.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.8103 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COX14-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-orphan.1-1:1
4.0 lnc-orphan.1-1:1
4.1 lnc-orphan.1-1:1
5.0 lnc-orphan.1-1:1
5.1 lnc-SMARCD1-2:1
5.2 lnc-COX14-1:1