Transcript: lnc-COX14-2:2

Basic information

LNCipedia transcript ID: lnc-COX14-2:2 
LNCipedia gene ID: lnc-COX14-2
Ensembl Gene ID: ENSG00000272368
Ensembl Transcript ID: ENST00000548468
Location (hg19): chr12:50505980-50559401
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 698 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548468.2
Alternative gene names: ENSG00000272368.2; RP4-605O3.4; AC074032.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -24.153 non-coding 
CPAT coding probability 2.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COX14-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-orphan.1-2:2
4.1 lnc-orphan.1-2:2
5.0 lnc-orphan.1-2:2
5.1 lnc-SMARCD1-3:2
5.2 lnc-COX14-2:2