Transcript: lnc-COX7C-3:1

Basic information

LNCipedia transcript ID: lnc-COX7C-3:1 
LNCipedia gene ID: lnc-COX7C-3
Ensembl Gene ID: ENSG00000248701
Ensembl Transcript ID: ENST00000507653
Location (hg19): chr5:86093502-86096097
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 482 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009440; ENST00000507653; ENST00000507653.1; CTC-493L21.2-001; OTTHUMT00000369745.1; NONHSAT102579
Alternative gene names: XLOC_004453; linc-RASA1-2; ENSG00000248701; CTC-493L21.2; ENSG00000248701.1; OTTHUMG00000162606.1; AC008539.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.2942 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COX7C-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COX7C-3:1
3.1 lnc-COX7C-3:1
4.0 lnc-COX7C-3:1
4.1 lnc-COX7C-3:1
5.0 lnc-COX7C-3:1
5.1 lnc-MSH3-48:1
5.2 lnc-COX7C-3:1