Transcript: lnc-COX7C-6:1

Basic information

LNCipedia transcript ID: lnc-COX7C-6:1 
LNCipedia gene ID: lnc-COX7C-6
Ensembl Gene ID: ENSG00000249153
Ensembl Transcript ID: ENST00000504046
Location (hg19): chr5:85144320-85145017
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 698 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504046; ENST00000504046.1; CTD-2036A18.2-001; OTTHUMT00000370410.1; NONHSAT102554
Alternative gene names: ENSG00000249153; CTD-2036A18.2; ENSG00000249153.1; OTTHUMG00000162794.1; AC026414.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.5339 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COX7C-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COX7C-6:1
3.1 lnc-COX7C-6:1
4.0 lnc-COX7C-6:1
4.1 lnc-COX7C-6:1
5.0 lnc-COX7C-6:1
5.1 lnc-MSH3-40:1
5.2 lnc-COX7C-6:1