Transcript: lnc-COX7C-8:1

Basic information

LNCipedia transcript ID: lnc-COX7C-8:1 
LNCipedia gene ID: lnc-COX7C-8
Ensembl Gene ID: ENSG00000249842
Ensembl Transcript ID: ENST00000511602
Location (hg19): chr5:84742792-84743576
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 785 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511602; ENST00000511602.1; CTD-2331D11.4-001; OTTHUMT00000369662.1; NONHSAT102548
Alternative gene names: ENSG00000249842; CTD-2331D11.4; ENSG00000249842.1; OTTHUMG00000162579.1; AC010486.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.2553 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COX7C-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COX7C-8:1
3.1 lnc-COX7C-8:1
4.0 lnc-COX7C-8:1
4.1 lnc-COX7C-8:1
5.0 lnc-COX7C-8:1
5.1 lnc-MSH3-37:1
5.2 lnc-COX7C-8:1