Transcript: lnc-CPM-2:5

Basic information

LNCipedia transcript ID: lnc-CPM-2:5 
LNCipedia gene ID: lnc-CPM-2
Ensembl Gene ID: ENSG00000247363
Ensembl Transcript ID: ENST00000433116
Location (hg19): chr12:69079349-69080617
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 550 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000433116; ENST00000433116.2; RP11-637A17.2-003; OTTHUMT00000403194.1; NONHSAT029325
Alternative gene names: ENSG00000247363; RP11-637A17.2; ENSG00000247363.2; OTTHUMG00000169264.1; AC090061.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPM-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPM-1:5
3.1 lnc-CPM-2:5
4.0 lnc-CPM-2:5
4.1 lnc-CPM-2:5
5.0 lnc-CPM-2:5
5.1 lnc-CPM-2:5
5.2 lnc-CPM-2:5