Transcript: lnc-CPN2-4:1

Basic information

LNCipedia transcript ID: lnc-CPN2-4:1 
HGNC Gene Symbol: lnc-CPN2-4    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2028
Ensembl Gene ID: ENSG00000230102
Ensembl Transcript ID: ENST00000458224
RefSeq ID: NR_136179
Location (hg19): chr3:193723245-193788759
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 433 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000458224; ENST00000458224.1; RP11-407B7.1-003; OTTHUMT00000342641.1; NONHSAT094036; ENST00000458224.5; NR_136179.1
Alternative gene names: ENSG00000230102; RP11-407B7.1; ENSG00000230102.1; OTTHUMG00000155989.1; ENSG00000230102.3; ENSG00000230102.7; LINC02028; LOC285389


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.8607 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPN2-4:1 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPN2-4:1
3.1 lnc-CPN2-4:1
4.0 lnc-CPN2-4:1
4.1 lnc-CPN2-4:1
5.0 lnc-CPN2-4:1
5.1 lnc-LRRC15-5:6
5.2 lnc-CPN2-4:1