Transcript: lnc-CPN2-4:12

Basic information

LNCipedia transcript ID: lnc-CPN2-4:12 
HGNC Gene Symbol: lnc-CPN2-4    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2028
Ensembl Gene ID: ENSG00000230102
Ensembl Transcript ID: ENST00000597974
Location (hg19): chr3:193773268-193776238
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 203 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT147271; ENST00000597974.1; ENST00000597974.5
Alternative gene names: ENSG00000230102.3; RP11-407B7.1; ENSG00000230102.7; LINC02028


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPN2-4:12 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CPN2-4:12
4.0 lnc-CPN2-4:12
4.1 lnc-CPN2-4:12
5.0 lnc-CPN2-4:12
5.1 lnc-LRRC15-5:34
5.2 lnc-CPN2-4:12