Transcript: lnc-CPN2-4:2

Basic information

LNCipedia transcript ID: lnc-CPN2-4:2 
LNCipedia gene ID: lnc-CPN2-4
Location (hg19): chr3:193727965-193788741
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 701 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000449350; ENST00000449350.1; RP11-407B7.1-002; OTTHUMT00000342640.1
Alternative gene names: ENSG00000230102; RP11-407B7.1; ENSG00000230102.1; OTTHUMG00000155989.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.0563 non-coding 
CPAT coding probability 26.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPN2-4:2 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPN2-4:2
3.1 lnc-CPN2-4:2
4.0 lnc-CPN2-4:2
4.1 lnc-CPN2-4:2
5.0 lnc-CPN2-4:2
5.1 lnc-LRRC15-5:8
5.2 lnc-CPN2-4:2