Transcript: lnc-CPN2-4:33

Basic information

LNCipedia transcript ID: lnc-CPN2-4:33 
HGNC Gene Symbol: lnc-CPN2-4    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2028
Ensembl Gene ID: ENSG00000230102
Ensembl Transcript ID: ENST00000625879
Location (hg19): chr3:193773336-193776257
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 421 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625879.2
Alternative gene names: ENSG00000230102.7; RP11-407B7.1; LINC02028


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -278.2479 non-coding 
CPAT coding probability 7.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPN2-4:33 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CPN2-4:33
4.1 lnc-CPN2-4:33
5.0 lnc-CPN2-4:33
5.1 lnc-LRRC15-5:30
5.2 lnc-CPN2-4:33