Transcript: lnc-CPO-4:1

Basic information

LNCipedia transcript ID: lnc-CPO-4:1 
LNCipedia gene ID: lnc-CPO-4
Ensembl Gene ID: ENSG00000225916
Ensembl Transcript ID: ENST00000454444
Location (hg19): chr2:208091673-208093032
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 551 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003086; ENST00000454444; ENST00000454444.1; AC007879.4-001; OTTHUMT00000336775.1; NONHSAT076592
Alternative gene names: XLOC_001825; linc-CREB1-2; ENSG00000225916; AC007879.4; ENSG00000225916.1; OTTHUMG00000154724.1; AC007879.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.3136 non-coding 
CPAT coding probability 4.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CPO-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPO-4:1
3.1 lnc-CPO-4:1
4.0 lnc-CPO-4:1
4.1 lnc-CPO-4:1
5.0 lnc-CPO-4:1
5.1 lnc-CPS1-44:3
5.2 lnc-CPO-4:1