Transcript: lnc-CRABP2-2:1

Basic information

LNCipedia transcript ID: lnc-CRABP2-2:1 
LNCipedia gene ID: lnc-CRABP2-2
Location (hg19): chr1:156657489-156661789
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4120 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000646; ENST00000441272; ENST00000441272.1; RP11-66D17.3-001; OTTHUMT00000098960.1; NONHSAT006905
Alternative gene names: XLOC_001047; linc-NES; ENSG00000237588; RP11-66D17.3; ENSG00000237588.1; OTTHUMG00000041297.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.0336 non-coding 
CPAT coding probability 13.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRABP2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CRABP2-2:1
3.1 lnc-CRABP2-2:1
4.0 lnc-CRABP2-2:1
4.1 lnc-CRABP2-2:1
5.0 lnc-CRABP2-2:1
5.1 lnc-PAQR6-18:1
5.2 lnc-CRABP2-2:1