Transcript: lnc-CRACR2A-3:8

Basic information

LNCipedia transcript ID: lnc-CRACR2A-3:8 
LNCipedia gene ID: lnc-CRACR2A-3
Location (hg19): chr12:3405368-3409390
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2303 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000505276; ENST00000505276.2; RP5-1063M23.1-001; OTTHUMT00000398632.1; NONHSAT025509
Alternative gene names: ENSG00000250770; RP5-1063M23.1; ENSG00000250770.2; OTTHUMG00000168181.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.9286 non-coding 
CPAT coding probability 12.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRACR2A-3:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EFCAB4B-3:1
3.1 lnc-EFCAB4B-4:1
4.0 lnc-EFCAB4B-4:1
4.1 lnc-EFCAB4B-8:10
5.0 lnc-EFCAB4B-8:10
5.1 lnc-CHD4-91:8
5.2 lnc-CRACR2A-3:8