Transcript: lnc-CRB2-1:1

Basic information

LNCipedia transcript ID: lnc-CRB2-1:1 
LNCipedia gene ID: lnc-CRB2-1
Ensembl Gene ID: ENSG00000237336
Ensembl Transcript ID: ENST00000458025
Location (hg19): chr9:126254163-126255435
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 722 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458025.1; RP11-230L22.4-001; OTTHUMT00000053992.1; NONHSAT134658
Alternative gene names: ENSG00000237336.1; RP11-230L22.4; OTTHUMG00000020639.1; AL445489.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.4817 non-coding 
CPAT coding probability 2.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRB2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CRB2-1:1
4.0 lnc-CRB2-1:1
4.1 lnc-CRB2-1:1
5.0 lnc-CRB2-1:1
5.1 lnc-DAB2IP-29:1
5.2 lnc-CRB2-1:1