Transcript: lnc-CREBL2-1:1

Basic information

LNCipedia transcript ID: lnc-CREBL2-1:1 
LNCipedia gene ID: lnc-CREBL2-1
Ensembl Gene ID: ENSG00000257004
Ensembl Transcript ID: ENST00000539988
Location (hg19): chr12:12821916-12838009
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 241 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539988; ENST00000539988.1; RP11-180M15.3-001; OTTHUMT00000400666.1; NONHSAT026989
Alternative gene names: ENSG00000257004; RP11-180M15.3; ENSG00000257004.1; OTTHUMG00000168706.1; AC008115.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -143.7791 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CREBL2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CREBL2-1:1
3.1 lnc-CREBL2-1:1
4.0 lnc-CREBL2-1:1
4.1 lnc-CREBL2-1:1
5.0 lnc-CREBL2-1:1
5.1 lnc-BCL2L14-13:1
5.2 lnc-CREBL2-1:1