Transcript: lnc-CRISP1-1:2

Basic information

LNCipedia transcript ID: lnc-CRISP1-1:2 
LNCipedia gene ID: lnc-CRISP1-1
RefSeq ID: NR_110843
Location (hg19): chr6:49783206-49792479
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1738 bp
Exons: 5
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011217; NONHSAT113064; NR_110843; NR_110843.1
Alternative gene names: XLOC_005740; linc-PGK2; LOC101927048


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.4636 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRISP1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CRISP1-1:2
3.1 lnc-CRISP1-1:2
4.0 lnc-CRISP1-1:2
4.1 lnc-CRISP1-1:2
5.0 lnc-CRISP1-1:2
5.1 lnc-PGK2-1:2
5.2 lnc-CRISP1-1:2