Transcript: lnc-CRLF3-7:1

Basic information

LNCipedia transcript ID: lnc-CRLF3-7:1 
LNCipedia gene ID: lnc-CRLF3-7
Ensembl Gene ID: ENSG00000231421
Ensembl Transcript ID: ENST00000436477
Location (hg19): chr17:28900490-28904018
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1351 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT052787; ENST00000436477.2; ENST00000436477.6
Alternative gene names: ENSG00000231421.3; AC006050.2; ENSG00000231421.7; AC011840.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 127.5756 coding 
CPAT coding probability 13.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CRLF3-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006050.2.1-5:1
4.0 lnc-AC006050.2.1-5:1
4.1 lnc-AC006050.2.1-5:1
5.0 lnc-AC006050.2.1-5:1
5.1 lnc-SLC6A4-13:1
5.2 lnc-CRLF3-7:1