Transcript: lnc-CRLF3-7:3

Basic information

LNCipedia transcript ID: lnc-CRLF3-7:3 
LNCipedia gene ID: lnc-CRLF3-7
Ensembl Gene ID: ENSG00000231421
Ensembl Transcript ID: ENST00000582291
Location (hg19): chr17:28900489-28901270
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 624 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT052786; ENST00000582291.1
Alternative gene names: ENSG00000231421.3; AC006050.2; ENSG00000231421.7; AC011840.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.3621 non-coding 
CPAT coding probability 2.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRLF3-7:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006050.2.1-5:3
4.0 lnc-AC006050.2.1-5:3
4.1 lnc-AC006050.2.1-5:3
5.0 lnc-AC006050.2.1-5:3
5.1 lnc-SLC6A4-13:3
5.2 lnc-CRLF3-7:3