Transcript: lnc-CRLF3-8:1

Basic information

LNCipedia transcript ID: lnc-CRLF3-8:1 
LNCipedia gene ID: lnc-CRLF3-8
Ensembl Gene ID: ENSG00000266775
Ensembl Transcript ID: ENST00000582125
Location (hg19): chr17:28884750-28885520
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 771 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582125.1; RP11-218M11.6-001; OTTHUMT00000443636.1; NONHSAT052779
Alternative gene names: ENSG00000266775.1; RP11-218M11.6; OTTHUMG00000178858.1; AC011840.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.2825 non-coding 
CPAT coding probability 6.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRLF3-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006050.2.1-2:1
4.0 lnc-AC006050.2.1-2:1
4.1 lnc-AC006050.2.1-2:1
5.0 lnc-AC006050.2.1-2:1
5.1 lnc-SLC6A4-11:1
5.2 lnc-CRLF3-8:1