Transcript: lnc-CRNKL1-3:1

Basic information

LNCipedia transcript ID: lnc-CRNKL1-3:1 
LNCipedia gene ID: lnc-CRNKL1-3
Location (hg19): chr20:19673883-19677414
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 379 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000435992.1; RP4-718D20.3-001; OTTHUMT00000078203.1
Alternative gene names: ENSG00000232675.1; RP4-718D20.3; OTTHUMG00000031991.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -177.1717 non-coding 
CPAT coding probability 22.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRNKL1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CRNKL1-3:1
4.0 lnc-CRNKL1-3:1
4.1 lnc-CRNKL1-3:1
5.0 lnc-CRNKL1-3:1
5.1 lnc-RRBP1-43:3
5.2 lnc-CRNKL1-3:1