Transcript: lnc-CRNKL1-3:4

Basic information

LNCipedia transcript ID: lnc-CRNKL1-3:4 
LNCipedia gene ID: lnc-CRNKL1-3
Ensembl Gene ID: ENSG00000232675
Ensembl Transcript ID: ENST00000435992
Location (hg19): chr20:19673853-19677414
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 409 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT078866; ENST00000435992.2
Alternative gene names: ENSG00000232675.3; RP4-718D20.3; ENSG00000232675.7; AL121830.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 65.769 coding 
CPAT coding probability 21.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CRNKL1-3:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CRNKL1-3:4
4.0 lnc-CRNKL1-3:4
4.1 lnc-CRNKL1-3:4
5.0 lnc-CRNKL1-3:4
5.1 lnc-RRBP1-43:4
5.2 lnc-CRNKL1-3:4