Transcript: lnc-CROCC-4:2

Basic information

LNCipedia transcript ID: lnc-CROCC-4:2 
LNCipedia gene ID: lnc-CROCC-4
Ensembl Gene ID: ENSG00000279151
Ensembl Transcript ID: ENST00000624517
Location (hg19): chr1:17028041-17032089
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 406 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT001197; ENST00000624517.1
Alternative gene names: ENSG00000279151.1; RP1-163M9.7; AL021920.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.4066 non-coding 
CPAT coding probability 5.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CROCC-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL137798.1-4:1
4.0 lnc-AL137798.1-4:1
4.1 lnc-AL137798.1-4:1
5.0 lnc-AL137798.1-4:1
5.1 lnc-SZRD1-17:1
5.2 lnc-CROCC-4:2