Transcript: lnc-CRYAA-2:1

Basic information

LNCipedia transcript ID: lnc-CRYAA-2:1 
LNCipedia gene ID: lnc-CRYAA-2
Ensembl Gene ID: ENSG00000225637
Ensembl Transcript ID: ENST00000435702
Location (hg19): chr21:44783212-44786446
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2816 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028851; ENST00000435702; ENST00000435702.1; AP001046.6-001; OTTHUMT00000195633.1; NONHSAT082401
Alternative gene names: XLOC_013961; linc-RRP1B-5; ENSG00000225637; AP001046.6; ENSG00000225637.1; OTTHUMG00000086868.1; AP001046.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.2643 non-coding 
CPAT coding probability 36.71% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CRYAA-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CRYAA-2:1
3.1 lnc-CRYAA-2:1
4.0 lnc-CRYAA-2:1
4.1 lnc-CRYAA-2:1
5.0 lnc-CRYAA-2:1
5.1 lnc-RRP1-16:3
5.2 lnc-CRYAA-2:1