Transcript: lnc-CRYBA4-9:3

Basic information

LNCipedia transcript ID: lnc-CRYBA4-9:3 
LNCipedia gene ID: lnc-CRYBA4-9
Ensembl Gene ID: ENSG00000230051
Ensembl Transcript ID: ENST00000413244
Location (hg19): chr22:27727748-27775226
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029402; ENST00000413244; ENST00000413244.1; CTA-929C8.8-001; OTTHUMT00000320630.1; NONHSAT084590
Alternative gene names: XLOC_014198; linc-HSCB-5; ENSG00000230051; CTA-929C8.8; ENSG00000230051.1; OTTHUMG00000150950.1; AL020994.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.7795 non-coding 
CPAT coding probability 10.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRYBA4-9:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CRYBA4-9:3
3.1 lnc-CRYBA4-9:3
4.0 lnc-CRYBA4-9:3
4.1 lnc-CRYBA4-9:3
5.0 lnc-CRYBA4-9:3
5.1 lnc-CABIN1-65:3
5.2 lnc-CRYBA4-9:3