Transcript: lnc-CRYBB3-1:1

Basic information

LNCipedia transcript ID: lnc-CRYBB3-1:1 
LNCipedia gene ID: lnc-CRYBB3-1
Ensembl Gene ID: ENSG00000236641
Ensembl Transcript ID: ENST00000454253
Location (hg19): chr22:25608709-25609652
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 482 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029371; ENST00000454253; ENST00000454253.1; CTA-221G9.7-001; OTTHUMT00000320348.1; NONHSAT084400
Alternative gene names: XLOC_014183; linc-CRYBB2; ENSG00000236641; CTA-221G9.7; ENSG00000236641.1; OTTHUMG00000150865.1; Z99916.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -266.772 non-coding 
CPAT coding probability 6.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CRYBB3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CRYBB3-1:1
3.1 lnc-CRYBB3-1:1
4.0 lnc-CRYBB3-1:1
4.1 lnc-CRYBB3-1:1
5.0 lnc-CRYBB3-1:1
5.1 lnc-CABIN1-28:2
5.2 lnc-CRYBB3-1:1