Transcript: lnc-CSAG1-1:4

Basic information

LNCipedia transcript ID: lnc-CSAG1-1:4 
LNCipedia gene ID: lnc-CSAG1-1
Location (hg19): chrX:151889195-151890140
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 848 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00017102; ENST00000437309.1; RP1-14D6.7-001; OTTHUMT00000058759.1; NONHSAT139044
Alternative gene names: XLOC_008259; linc-CSAG2; ENSG00000231447.1; RP1-14D6.7; OTTHUMG00000022647.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.6944 non-coding 
CPAT coding probability 2.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSAG1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAGEA12-1:1
3.1 lnc-MAGEA12-1:1
4.0 lnc-MAGEA12-1:1
4.1 lnc-MAGEA12-1:1
5.0 lnc-MAGEA12-1:1
5.1 lnc-CTAG1B-47:1
5.2 lnc-CSAG1-1:4