Transcript: lnc-CSAG2-2:2

Basic information

LNCipedia transcript ID: lnc-CSAG2-2:2 
LNCipedia gene ID: lnc-CSAG2-2
Location (hg19): chrX:151876743-151877747
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 847 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000356911.4; CSAG3-201
Alternative gene names: ENSG00000197463.8; CSAG3; OTTHUMG00000022644.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.8438 non-coding 
CPAT coding probability 25.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSAG2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAGEA12-2:2
4.0 lnc-MAGEA12-2:2
4.1 lnc-MAGEA12-2:2
5.0 lnc-MAGEA12-2:2
5.1 lnc-CTAG1B-48:2
5.2 lnc-CSAG2-2:2