Transcript: lnc-CSAG3-2:1

Basic information

LNCipedia transcript ID: lnc-CSAG3-2:1 
LNCipedia gene ID: lnc-CSAG3-2
Ensembl Gene ID: ENSG00000231447
Ensembl Transcript ID: ENST00000437309
Location (hg19): chrX:151915343-151916288
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 848 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437309.1
Alternative gene names: ENSG00000231447.1; RP1-14D6.7; AC244102.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -48.1952 non-coding 
CPAT coding probability 2.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSAG3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CSAG1-2:1
4.1 lnc-CSAG1-2:1
5.0 lnc-CSAG1-2:1
5.1 lnc-MAGEA11-31:1
5.2 lnc-CSAG3-2:1