Transcript: lnc-CSDC2-1:2

Basic information

LNCipedia transcript ID: lnc-CSDC2-1:2 
LNCipedia gene ID: lnc-CSDC2-1
Location (hg19): chr22:41994034-41995651
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1582 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000510703; TCONS_00029427; NONHSAT086924
Alternative gene names: ENSG00000249355; XLOC_014251; linc-XRCC6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.2677 non-coding 
CPAT coding probability 8.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSDC2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XRCC6-1:1
3.1 lnc-XRCC6-1:1
4.0 lnc-XRCC6-1:1
4.1 lnc-XRCC6-1:1
5.0 lnc-XRCC6-1:1
5.1 lnc-L3MBTL2-6:1
5.2 lnc-CSDC2-1:2