Transcript: lnc-CSF2RA-2:1

Basic information

LNCipedia transcript ID: lnc-CSF2RA-2:1 
LNCipedia gene ID: lnc-CSF2RA-2
Ensembl Gene ID: ENSG00000237531
Ensembl Transcript ID: ENST00000420865
Location (hg19): chrX:950956-955100
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 588 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00016958; ENST00000420865; ENST00000420865.1; RP11-309M23.1-001; OTTHUMT00000055588.1; NONHSAT136037; ENST00000420865.6
Alternative gene names: XLOC_007911; linc-CSF2RA-1; ENSG00000237531; RP11-309M23.1; ENSG00000237531.1; OTTHUMG00000021054.1; ENSG00000237531.6; AL672277.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.3211 non-coding 
CPAT coding probability 2.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSF2RA-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SHOX-2:1
3.1 lnc-SHOX-2:1
4.0 lnc-SHOX-2:1
4.1 lnc-SHOX-2:1
5.0 lnc-SHOX-2:1
5.1 lnc-GK-198:1
5.2 lnc-CSF2RA-2:1