Transcript: lnc-CSMD1-1:17

Basic information

LNCipedia transcript ID: lnc-CSMD1-1:17 
LNCipedia gene ID: lnc-CSMD1-1
Ensembl Gene ID: ENSG00000277526
Ensembl Transcript ID: ENST00000618928
RefSeq ID: NR_125423
Location (hg19): chr8:2447076-2480453
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1705 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000618928.4; NR_125423.1
Alternative gene names: ENSG00000277526.4; RP11-378A12.1; AC245123.1; LOC101927815


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.9909 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSMD1-1:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CSMD1-1:17
4.1 lnc-CSMD1-1:17
5.0 lnc-CSMD1-1:17
5.1 lnc-DEFA1B-65:19
5.2 lnc-CSMD1-1:17