Transcript: lnc-CSMD1-1:18

Basic information

LNCipedia transcript ID: lnc-CSMD1-1:18 
LNCipedia gene ID: lnc-CSMD1-1
Location (hg19): chr8:2387147-2415857
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 388 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014912; NONHSAT124718
Alternative gene names: XLOC_006978; linc-ERICH1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.8569 non-coding 
CPAT coding probability 5.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSMD1-1:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSMD1-3:1
3.1 lnc-CSMD1-3:1
4.0 lnc-CSMD1-1:18
4.1 lnc-CSMD1-1:18
5.0 lnc-CSMD1-1:18
5.1 lnc-DEFA1B-65:20
5.2 lnc-CSMD1-1:18