Transcript: lnc-CSMD1-1:22

Basic information

LNCipedia transcript ID: lnc-CSMD1-1:22 
LNCipedia gene ID: lnc-CSMD1-1
Location (hg19): chr8:2527314-2585992
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 602 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000254319.1|ENST00000517357.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.9268 non-coding 
CPAT coding probability 11.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSMD1-1:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CSMD1-1:22
5.0 lnc-CSMD1-1:22
5.1 lnc-DEFA1B-65:3
5.2 lnc-CSMD1-1:22