Transcript: lnc-CSMD1-1:8

Basic information

LNCipedia transcript ID: lnc-CSMD1-1:8 
LNCipedia gene ID: lnc-CSMD1-1
Location (hg19): chr8:2554297-2562808
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 239 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00015396
Alternative gene names: XLOC_006980; linc-ERICH1-9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -199.0268 non-coding 
CPAT coding probability 13.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSMD1-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSMD1-1:8
3.1 lnc-CSMD1-1:8
4.0 lnc-CSMD1-1:8
4.1 lnc-CSMD1-1:8
5.0 lnc-CSMD1-1:8
5.1 lnc-DEFA1B-65:17
5.2 lnc-CSMD1-1:8