Transcript: lnc-CSMD1-1:9

Basic information

LNCipedia transcript ID: lnc-CSMD1-1:9 
LNCipedia gene ID: lnc-CSMD1-1
RefSeq ID: NR_125426
Location (hg19): chr8:2554055-2585991
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 612 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125426; NR_125426.1
Alternative gene names: LOC101927815


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.9268 non-coding 
CPAT coding probability 9.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSMD1-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CSMD1-2:5
4.0 lnc-CSMD1-1:9
4.1 lnc-CSMD1-1:9
5.0 lnc-CSMD1-1:9
5.1 lnc-DEFA1B-65:10
5.2 lnc-CSMD1-1:9