Transcript: lnc-CSMD1-5:1

Basic information

LNCipedia transcript ID: lnc-CSMD1-5:1 
LNCipedia gene ID: lnc-CSMD1-5
Ensembl Gene ID: ENSG00000253510
Ensembl Transcript ID: ENST00000517807
Location (hg19): chr8:5363590-5366648
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3059 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517807; ENST00000517807.1; RP5-991O23.1-001; OTTHUMT00000374524.1; NONHSAT124758
Alternative gene names: ENSG00000253510; RP5-991O23.1; ENSG00000253510.1; OTTHUMG00000163612.1; AC004944.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.9941 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSMD1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSMD1-5:1
3.1 lnc-CSMD1-5:1
4.0 lnc-CSMD1-5:1
4.1 lnc-CSMD1-5:1
5.0 lnc-CSMD1-5:1
5.1 lnc-DEFA1B-47:1
5.2 lnc-CSMD1-5:1