Transcript: lnc-CSNK1A1-1:4

Basic information

LNCipedia transcript ID: lnc-CSNK1A1-1:4 
LNCipedia gene ID: lnc-CSNK1A1-1
Location (hg19): chr5:149014728-149020937
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3919 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000081623.1|HBMT00001171060.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -16.0257 non-coding 
CPAT coding probability 2.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CSNK1A1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CSNK1A1-1:4
5.0 lnc-CSNK1A1-1:4
5.1 lnc-FAXDC2-70:3
5.2 lnc-CSNK1A1-1:4